People

Lab September 2010(September 2010)

[Sep 09] [Feb 09] [Aug 07] [May 06] [March 06] [Fall 05] [July 05] [Summer 04]

Current People

Faculty:

Dr. Daisuke Kihara [CV] email

Senior Researcher:

Professor Changsoon Park Chung-Ang University, Statistics, Seoul, Korea

Collaborator:

Mindaugas Indriunas Lithuania

Postdoc:

Hyung Rae Kim kim1353
Sael Lee lee399

Graduate Students:

Meghana Chitale Computer Science (CS) mchitale
Michal Jamroz International PhD Program, Warsaw University, Poland
David La Biological Sciences (BIOL) davidla
Bin Li CS lib
Muyi Liu PULSe liu413
Mario Messih King Abdullah University of Science and Technology, Saudi Arabia, Summer intern
Juan Esquivel Rodriguez CS jesquivel
Mingjie Tang CS tang49
Chao Yuan Biol Sci (PULSe) yuan13

Graduated

Sangwook Lee Biological Sciences (BIOL) lee59
Greg Thomas Biological Sciences (BIOL) thomas41

Undergraduate Students:

Roshna Agarwal Computer Science (CS) ragarwal
Benjamin Bastnagel Biol bbastnag
Liyun Fan Biol fanl
Matt Herron Aminal Science/Computer Science mherron
William Hoffman Biol whoffman
Yilong Jin CS jin28
Sanmeet Kanhere CS skanhere
Min-Su Kong Biol mkong
Hayun Lee Biol -
Wansuk Lim CS/Mat -
Yingfei Ma Stat ma33
Abram Magner CS anmagner
Shriphani Palakodety CS spalakod
Satwica Yerneni Internship, Vellore Institute of Technology, India -
Gaonan Zhang Biol zhang675

Formerly with us

Openings

Postdoctoral Positions

Qualified candidates should hold a PhD in Physics, Computer Science, Biology, Chemistry, Doctor of Engineering, or in a related field. The primary area sought is protein tertiary structure modeling & prediction, protein docking, and protein global/local shape comparison and search. Experience in electron microscopy or tomography data analysis, and 3D shape retrieval are plus. Fluent programming skill and good communication skills are essential. Highly motivated and creative candidates with a strong record of publication are encouraged to apply. Send curriculum vitae and contact information of three references to: dkihara@purdue.edu . Postal mail should be sent to: Dr. Daisuke Kihara, Department of Biological Sciences, Purdue University, Hockmyer Hall of Structural Biology, 249 S. Martin Jischke Drive, West Lafayette, IN 47907.

Graduate students

Highly motivated graduate students in the departments of computer science, biological sciences, PULSe program at Purdue are encouraged to contact Dr. Kihara. Available projects include protein 3D shape comparison, docking, 3D structure prediction, function prediction, and DNA sequence analyses (motif search, small RNA detection). Please note that usually research assistantship is only offered after working at least one semester as an independent study to prove productivy. Previous experience in bioinformatics is desirable but not necessary. Programming skill is not a requirement at the beginning if you are not CS major as long as you are eager to learn it in the first year.

Undergraduate Students

If you are interested in computational work in biology, you are almost always welcome to our group. We have worked with over twenty undergraduate students, and have a good record of scientific achievments with them, including publishing full research papers, research presentation in conferences, entering graduate programs. Feel free to contact Dr. Kihara.

Summer internship with pay

Not offered.

Recent News

Follow us on Twitter!Follow kiharalab on Twitter News Archives are available here.

  • A couple of postdoc positions are available. Please see here
  • "JnCML-like, an EF-hand motif-containing gene seasonally upregulated in the transition zone of black walnut (Juglans nigra L.)" by Zhonglian Huang, Priyanka Surana, Daisuke Kihara, Richard Meilan, Keith Woeste, accepted for American J. Molecular Biology.
  • Professor Andrzej Kloczkowski, Nationwide Children's Hospital, Ohio State University, visited our lab and gave a seminar in Structural Biology seminar series.
  • "Community wide asssessment of protein-interface modeling using a protein design based benchmark" by Fleishman et al. with Juan Esquivel-Rodriguez and D. Kihara accepted for J. Mol. Biol.
  • "Quantification of protein group coherence and pathway assignment using functional association" by Meghana Chitale, Shriphani Palakodety & D Kihara accepted on BMC Bioinformatics.
  • We welcome a new postdoc researcher, Dr. Hyung Rae Kim. Welcome, Hyung!
  • We welcome 2 rotation students, Karthik Padmanabhan and Mindaugas Indriunas from Biology and PULSe program.

Openings

Kihara Bioinformatics Laboratory is always looking for new people to join the lab. Our current list of openings is available here.