People

Lab September 2009(September 2009)

[Feb 2009] [Aug 2007] [May 2006] [March 2006] [Fall 2005] [July 05] [Summer 2004]

Current People

Faculty:

Dr. Daisuke Kihara [CV] email

Senior Researcher:

Professor Changsoon Park Chung-Ang University, Statistics, Seoul, Korea

Postdoc:

Mateusz Kurcinski mkurcins
Hao Chen chen177
Sael Lee lee399

Graduate Students:

Meghana Chitale Computer Science (CS) mchitale
Padmasini R. Chakravarthy Electrical and Computer Engineering (ECE) prchakra
Luciano Julia Biol, rotation
David La Biological Sciences (BIOL) davidla
Bin Li Computer Science (CS) lib
Muyi Liu PULSe rotation liu413
Juan Esquivel Rodriguez Computer Science (CS) jesquivel
Mingjie Tang Computer Science (CS) tang49
Chao Yuan Biol Sci (PULSe) yuan13

Graduated

Sangwook Lee Biological Sciences (BIOL) lee59
Greg Thomas Biological Sciences (BIOL) thomas41

Undergraduate Students:

Roshna Agarwal Computer Science (CS) ragarwal
Matt Herron Aminal Science/Computer Science mherron
William Hoffman Biol whoffman
Sajat Jain CS skjain
Sanmeet Kanhere CS skanhere
Min-Su Kong Biol mkong
Shuai Liu CS liu72
Abram Magner CS anmagner
Kunal Modi CS kmodi
Shriphani Palakodety CS spalakod
Wei-Chia Sun CS sunw
Yidi Wang Biol wang495

Formerly with us

Openings

Postdoctoral Positions

Qualified candidates should hold a PhD in Physics, Computer Science, Biology, Chemistry, Doctor of Engineering, or in a related field. The areas sought include, but are not limited to: protein global/local shape comparison and search, protein docking, and protein tertiary structure modeling or prediction. Previous experience in 3D shape retrieval in Engineering is a large plus. Fluent programming skill and good communication skills are essential. Highly motivated and creative candidates with a strong record of publication are encouraged to apply. Send curriculum vitae and contact information of three references to: dkihara@purdue.edu . Postal mail should be sent to: Dr. Daisuke Kihara, Department of Biological Sciences, Purdue University, Lilly Hall, 915 West State St. West Lafayette, IN 47907.

Graduate students

Highly motivated graduate students in the departments of computer science, biological sciences, PULSe program at Purdue are encouraged to contact Dr. Kihara. Available projects include protein 3D shape comparison, docking, 3D structure prediction, function prediction, and DNA sequence analyses (motif search, small RNA detection). Please note that usually research assistantship is only offered after working at least one semester as an independent study to prove productivy. Previous experience in bioinformatics is desirable but not necessary. Programming skill is not a requirement at the beginning if you are not CS major as long as you are eager to learn it in the first year.

Undergraduate Students

If you are interested in computational work in biology, you are almost always welcome to our group. We have worked with over twenty undergraduate students, and have a good record of scientific achievments with them, including publishing full research papers, research presentation in conferences, entering graduate programs. Feel free to contact Dr. Kihara.

Summer internship with pay

Not offered.